Information for HuBMAP developers

Tools for developers

Depending on your specific development work, you may need access to some or all of the following tools.

An account on the HIVE infrastructure

Request an account by submitting this form https://grants.psc.edu/cgi-bin/hubmap/add_users.pl. Once approved, you will receive an email with account information and login instructions, with access to the HIVE cluster and to Bridges-2.
Using the HIVE Infrastructure.

Access to HuBMAP AWS

To request an account, email help@hubmapconsortium.org

DockerHub

HuBMAP uses DockerHub to share containers. Request to join the HuBMAP organization by emailing a request to help@hubmapconsortium.org.
HuBMAP organization | Contribute new containers

Access to HuBMAP space in Globus

You might need access to access data to HuBMAP folders in Globus. Note that your Globus identity must be associated with an institution or with your NIH eRA Commons account. You cannot use a gmail or an ORCID Globus identity for HuBMAP.

Globus access also provides you with access to the HuBMAP ingest portal.
How to get Globus access

HuBMAP workspace in GitHub

The HuBMAP GitHub workspace includes repos for tools related to the work of the Consortium.
HuBMAP workspace | How to get access

HuBMAP workspace in protocols.io

HuBMAP requires that all protocols be publicly available through the HuBMAP Method Development Community on protocols.io. You must be a member of this workspace to publish your protocols there.
HuBMAP community | How to join

Data Authentication

See a diagram of data flow through the authentication process

Questions

If you have questions at any time, please email help@hubmapconsortium.org.


 

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