Collaborative Projects

Collaborative Projects bring multiple funded components together to advance the goals of the Consortium. In these joint endeavors, HuBMAP groups work with their Consortium colleagues on a project which combines the strengths and skills of each group for the benefit of the Consortium.

See the list of collaborative projects below, and click through to learn about their fascinating work.

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3D Tissue Reconstruction and Segmentation in Support of CCF Design
HIVE MC Indiana U & RTI General Electric

Building 3D tissue Maps for the Placenta and Pregnant Uterus
HIVE MC Indiana U. & TMC UCSD (Female reproduction)

CalTech/Stanford Study of Colon Tissue
TMC CalTech & TMC Stanford

Cardiac Vasculature and Lymphatic Tissue Analysis
TMC CalTech & TMC U. Florida

Collaboration with UCSD Placenta and Pregnant Uterus group to coordinate Female Cell Atlas collection at both TMCs
TMC UCSD & TMC U. Penn.

Consortium-wide Collaboration to Investigate a Common Tissue:
TMC CalTech/U. Washington, TMC U. Florida, TMC Stanford, TMC UCSD (KULMAP), TMC Vanderbilt (Kidney), TMC CHOP, TMC U. Connecticut, TMC U. Penn., TMC UCSD (Female reproduction), TMC Vanderbilt (Eye/Pancreas), & TTD Yale

Cross-platform cell segmentation and 3D reconstruction
TMC Vanderbilt (Kidney) & TTD Columbia

Developing a harmonized dataset for cross-platform segmentation
RTI Stanford

Electro-SABER: Volumetric Protein Mapping Collaboration
TTD Harvard & TTD Stanford

HiFi spatial transcriptome and RNA-chromatin interactions of human heart
TTD Harvard & TTD UCSD

HiFi spatial transcriptome and RNA-chromatin interactions of human Kidney
TMC USCD (KULMAP) & TTD UCSD

HuBMAP RTI team Northwestern
RTI Northwestern & TMC U. Penn.

Imaging of Proteoforms in Tissues using nano-DESI Mass Spectrometry Imaging
RTI Northwestern and TTD Purdue

Integrating intron seqFISH with seqFISH
TMC CalTech/U. Washington & TTD CalTech

Integrating Slide-seq and snRNA-seq data for human colon tissue
TMC Stanford & RTI Broad Institute

Integrating Slide-seq and snRNA-seq data for human kidney tissue
TMC UCSD (KULMAP) & RTI Broad Institute

Integration of multi-parametric multi-modality & multi-resolution data acquired using MALDI and Cell DIVE
TMC Vanderbilt (Kidney) & RTI General Electric

Integration of proteome and phosphoproteome mapping of human pancreatic tissue sections
TMC PNNL & TTD PNNL/Northwestern

Integrative multi-modal molecular imaging of the pancreas
TMC PNNL & TMC Vanderbilt (Eye/Pancreas)

Integrative multi-modal molecular imaging of the pancreas and regional lymphatic system
TMC PNNL & TMC U. Florida

Joining forces to advance protein and proteoform imaging for HuBMAP
TMC Vanderbilt (Kidney) & TTD PNNL

Lymphatic tissue and in situ transcriptomic profiling
TMC U. Florida & TTD CalTech

MALDI imaging mass spectrometry of spleen tissue for the construction of 3D molecular atlases
TMC Vanderbilt (Kidney) & TMC U. Florida

Multimodal imaging data integration for connected molecular atlases: Fusing MALDI and nanoDESI imaging mass spectrometry in human kidney tissue
TMC Vanderbilt (Kidney) & TTD Purdue

OCT of retina
TMC Vanderbilt (Eye/Pancreas) & TMC CHOP

Optimizing tissue processing methods for comparative analysis of DART-FISH2 and SABER-FISH on adult human kidney tissue
TMC UCSD (KULMAP) & TTD Harvard

Phosphoproteome imaging mass spec for uterine tissue analysis
TMC UCSD (Female reproduction) & TTD PNNL/Northwestern

Proteoform Atlas for Imaging Mass Spectrometry
RTI Northwestern & TMC Vanderbilt (Kidney)

Refining informatic approaches to enhance top-down proteomics data in the HuBMAP Consortium
RTI Northwestern & TTD PNNL

Spatial and Cell-type Restriction of Human CD45 Proteoforms
RTI Stanford & RTI Northwestern

Validating Commercial Antibodies for Use in the HuBMAP
TTD Columbia/Penn State &RTI Stanford

Validating Commercial Antibodies for Use in the HuBMAP Consortium
RTI Northwestern



 

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