Collaborative Projects
Collaborative Projects bring multiple funded components together to advance the goals of the Consortium. In these joint endeavors, HuBMAP groups work with their Consortium colleagues on a project which combines the strengths and skills of each group for the benefit of the Consortium.
See the list of collaborative projects below, and click through to learn about their fascinating work.
| 3D Tissue Reconstruction and Segmentation in Support of CCF Design | HIVE MC Indiana U & RTI General Electric |
| Building 3D tissue Maps for the Placenta and Pregnant Uterus | HIVE MC Indiana U. & TMC UCSD (Female reproduction) |
| CalTech/Stanford Study of Colon Tissue | TMC CalTech & TMC Stanford |
| Cardiac Vasculature and Lymphatic Tissue Analysis | TMC CalTech & TMC U. Florida |
| Collaboration with UCSD Placenta and Pregnant Uterus group to coordinate Female Cell Atlas collection at both TMCs | TMC UCSD & TMC U. Penn. |
| Consortium-wide Collaboration to Investigate a Common Tissue: | TMC CalTech/U. Washington, TMC U. Florida, TMC Stanford, TMC UCSD (KULMAP), TMC Vanderbilt (Kidney), TMC CHOP, TMC U. Connecticut, TMC U. Penn., TMC UCSD (Female reproduction), TMC Vanderbilt (Eye/Pancreas), & TTD Yale |
| Cross-platform cell segmentation and 3D reconstruction | TMC Vanderbilt (Kidney) & TTD Columbia |
| Developing a harmonized dataset for cross-platform segmentation | RTI Stanford |
| Electro-SABER: Volumetric Protein Mapping Collaboration | TTD Harvard & TTD Stanford |
| HiFi spatial transcriptome and RNA-chromatin interactions of human heart | TTD Harvard & TTD UCSD |
| HiFi spatial transcriptome and RNA-chromatin interactions of human Kidney | TMC USCD (KULMAP) & TTD UCSD |
| HuBMAP RTI team Northwestern | RTI Northwestern & TMC U. Penn. |
| Imaging of Proteoforms in Tissues using nano-DESI Mass Spectrometry Imaging | RTI Northwestern and TTD Purdue |
| Integrating intron seqFISH with seqFISH | TMC CalTech/U. Washington & TTD CalTech |
| Integrating Slide-seq and snRNA-seq data for human colon tissue | TMC Stanford & RTI Broad Institute |
| Integrating Slide-seq and snRNA-seq data for human kidney tissue | TMC UCSD (KULMAP) & RTI Broad Institute |
| Integration of multi-parametric multi-modality & multi-resolution data acquired using MALDI and Cell DIVE | TMC Vanderbilt (Kidney) & RTI General Electric |
| Integration of proteome and phosphoproteome mapping of human pancreatic tissue sections | TMC PNNL & TTD PNNL/Northwestern |
| Integrative multi-modal molecular imaging of the pancreas | TMC PNNL & TMC Vanderbilt (Eye/Pancreas) |
| Integrative multi-modal molecular imaging of the pancreas and regional lymphatic system | TMC PNNL & TMC U. Florida |
| Joining forces to advance protein and proteoform imaging for HuBMAP | TMC Vanderbilt (Kidney) & TTD PNNL |
| Lymphatic tissue and in situ transcriptomic profiling | TMC U. Florida & TTD CalTech |
| MALDI imaging mass spectrometry of spleen tissue for the construction of 3D molecular atlases | TMC Vanderbilt (Kidney) & TMC U. Florida |
| Multimodal imaging data integration for connected molecular atlases: Fusing MALDI and nanoDESI imaging mass spectrometry in human kidney tissue | TMC Vanderbilt (Kidney) & TTD Purdue |
| OCT of retina | TMC Vanderbilt (Eye/Pancreas) & TMC CHOP |
| Optimizing tissue processing methods for comparative analysis of DART-FISH2 and SABER-FISH on adult human kidney tissue | TMC UCSD (KULMAP) & TTD Harvard |
| Phosphoproteome imaging mass spec for uterine tissue analysis | TMC UCSD (Female reproduction) & TTD PNNL/Northwestern |
| Proteoform Atlas for Imaging Mass Spectrometry | RTI Northwestern & TMC Vanderbilt (Kidney) |
| Refining informatic approaches to enhance top-down proteomics data in the HuBMAP Consortium | RTI Northwestern & TTD PNNL |
| Spatial and Cell-type Restriction of Human CD45 Proteoforms | RTI Stanford & RTI Northwestern |
| Validating Commercial Antibodies for Use in the HuBMAP | TTD Columbia/Penn State &RTI Stanford |
| Validating Commercial Antibodies for Use in the HuBMAP Consortium | RTI Northwestern |