September 2019 HuBMAP All-Hands Meeting
Stanford University

List of Attendees

First NameLast NameEmailFunded project Role
Sushma AnandAkojusushma.ananda13@gmail.comHIVE: CMU (Bar-Joseph, Paten, Teichmann)External Program Consultants
YousefAl-Kofahialkofahi@ge.comRapid Technology ImplementationPI
MarkAtkinsonatkinson@ufl.eduTMC: Florida (Atkinson, Bodenmiller, Nick)PI
AmirBahmaniabahman@stanford.eduTMC: Stanford (Snyder)Other
ZivBar-Josephzivbj@cs.cmu.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)PI
WinstonBeckerwbecker@stanford.eduTMC: Stanford (Snyder)Graduate Student
TylerBesttyler.best@nih.govNot ApplicableNIH Staff
PhilipBloodblood@psc.eduHIVE: IEC (Nystrom, Silverstein)Other
KatyBornerkaty@indiana.eduHIVE: IU (Borner)PI
AnnemarieBossannemarie.boss@knowinnovation.comNot ApplicableExternal Program Consultants
MaiganBruskomaigan@ufl.eduTMC: Florida (Atkinson, Bodenmiller, Nick)Other
AndreasBueckleabueckle@indiana.eduHIVE: IU (Borner)Graduate Student
KristinBurnum-Johnsonkristin.burnum-johnson@pnnl.govTTD: Purdue (Laskin)Other
LouiseCabansaylcabansa@ucsc.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)Other
LongCailongcai@gmail.comTTD: Caltech-Harvard (Cai, Yuan)PI
JeannieCamarillojeannie.camarillo@northwestern.eduRapid Technology ImplementationPostdoc
HassanChaibhchaib@stanford.eduTMC: Stanford (Snyder)Other
MarcCharettemarc.charette@nih.govTTD: Caltech-Harvard (Cai, Yuan)NIH Staff
FeiChenchenf@broadinstitute.orgRapid Technology ImplementationPI
MikeCherrycherry@stanford.eduTMC: Stanford (Snyder)Guests
RoxanneChiurbchiu@stanford.eduTMC: Stanford (Snyder)Technician
RichardConroyconroyri@mail.nih.govNot ApplicableNIH Staff
LeonardCrosslecross@iu.eduHIVE: IU (Borner)Other
SethCurrlinscurrlin@ufl.eduTMC: Florida (Atkinson, Bodenmiller, Nick)Graduate Student
NinaDarninadar@caltech.eduTTD: Caltech-Harvard (Cai, Yuan)Technician
RonDaviskrhong@stanford.eduNot ApplicableGuests
StephenDeemsdeems@psc.eduHIVE: IEC (Nystrom, Silverstein)Other
TusharDesaitusharjd00@gmail.comTTD: Stanford (Harbury, Desai)PI
MichelleDevlinmdevlin@psc.eduHIVE: IEC (Nystrom, Silverstein)Other
TimothyDunnetim.dunne@knowinnovation.comNot ApplicableOther
ElizabethDuongtaduong@ucsd.eduTMC: UCSD (Zhang, Hagood, Jain, Kharchenko, Sun)Postdoc
EdEsplinexplain@stanford.eduTMC: Stanford (Snyder)Postdoc
SamouilFarhisfarhi@broadinstitute.orgRapid Technology ImplementationOther
ShaneFilusfilus@psc.eduHIVE: IEC (Nystrom, Silverstein)Other
ZorinaGaliszgalis@gmail.comNot ApplicableNIH Staff
DeepGangulidganguli@chanzuckerberg.comNot ApplicableOther
NilsGehlenborgNils@hms.harvard.eduHIVE: Harvard (Gehlenborg)PI
EllenGelfandegelfand@broadinstitute.orgNot ApplicableGuests
ZinaidaGoodzinaida@stanford.eduTMC: Stanford (Snyder)Postdoc
WilliamGreenleafwjg@stanford.eduTMC: Stanford (Snyder)PI
FionaGriffinfiona.griffin@chanzuckerberg.comNot ApplicableGuests
TuhinGuhatuhin83@stanford.eduTMC: Stanford (Snyder)Postdoc
DanielleGutierrezd.gutierrez@vanderbilt.eduTMC: Vanderbilt (Caprioli, Spraggins)Other
JamesHagoodjhagood@unc.eduTMC: UCSD (Zhang, Hagood, Jain, Kharchenko, Sun)PI
RyanHammerhammer.ryanw@gmail.comNot ApplicableOther
BruceHerrbherr@indiana.eduHIVE: IU (Borner)Technician
StephenHewitthewitts@mail.nih.govNot ApplicableExternal Program Consultants
JohnHickeyjwhickey@stanford.eduTMC: Stanford (Snyder)Postdoc
AaronHorningahorning@stanford.eduTMC: Stanford (Snyder)Postdoc
LucyHsulucy.hsu@nih.govNot ApplicableNIH Staff
ShannonHughesshannon.hughes@nih.govNot ApplicableNIH Staff
LihuaJianglihuaj.s@gmail.comTMC: Stanford (Snyder)Other
MardaJorgensenmarda@ufl.eduTMC: Florida (Atkinson, Bodenmiller, Nick)Other
PeterKantpkant@scivelo.pitt.eduHIVE: IEC (Nystrom, Silverstein)Other
MariaKeaysmk29@sanger.ac.ukNot ApplicableOther
NeilKellehern-kelleher@northwestern.eduNot ApplicablePI
JunhyongKimjunhyong@sas.upenn.eduNot ApplicableExternal Program Consultants
BlueLakeb1lake@eng.ucsd.eduTMC: UCSD (Zhang, Hagood, Jain, Kharchenko, Sun)Other
JuliaLaskinjlaskin@purdue.eduTTD: Purdue (Laskin)PI
KevinLeungkevin.leung@ucsf.eduNot ApplicableOther
ShinLinshinlin@uw.eduTMC: Caltech (Cai, Shendure, Trapnell)Other
BethLowrylowrye2@uw.eduNot ApplicablePI
TrevorManztrevor.j.manz@gmail.comHIVE: Harvard (Gehlenborg)Graduate Student
GeorgiMarinovmarinovg@stanford.eduTMC: Stanford (Snyder)Postdoc
WilliamMauckwmauck@nygenome.orgHIVE: NYGC (Satija)Other
RobertMurphymurphy@cmu.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)PI
MonicaNagendrannmonica@stanford.eduTTD: Stanford (Harbury, Desai)Postdoc
ElizabethNeumannElizabeth.neumann@vanderbilt.eduTMC: Vanderbilt (Caprioli, Spraggins)Postdoc
StephanieNevinssnevins@stanford.eduTMC: Stanford (Snyder)Graduate Student
HarryNickhnick@ufl.eduTMC: Florida (Atkinson, Bodenmiller, Nick)PI
DebraNigranigra@psc.eduHIVE: IEC (Nystrom, Silverstein)Other
NicholasNystromnystrom@psc.eduHIVE: IEC (Nystrom, Silverstein)PI
BrianO'Connorbroconno@ucsc.eduNot ApplicableOther
CharlesOverbeckcoverbec@ucsc.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)Other
BenedictPatenbpaten@ucsc.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)PI
NataliePereznperez9@ucsc.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)Other
NicoPiersonnicogpt@caltech.eduTTD: Caltech-Harvard (Cai, Yuan)Technician
AjayPillaiajay.pillai3@nih.govNot ApplicableNIH Staff
SylviaPlevritissylvia.plevritis@stanford.eduTMC: Stanford (Snyder)PI
DenaProcaccinidena.procaccini@nih.govNot ApplicableNIH Staff
GloriaPryhubergloria_pryhuber@urmc.rochester.eduTMC: UCSD (Zhang, Hagood, Jain, Kharchenko, Sun)Other
DonnalynRoxeydonnalyn.roxey@knowinnovation.comOther
Ananda LRoyananda.roy@nih.govNot ApplicableNIH Staff
MatthewRuffalomruffalo@cs.cmu.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)Other
SinemSakasinem.saka@wyss.harvard.eduTTD: Harvard (Yin)Postdoc
RobinScibekflaus@psc.eduHIVE: IEC (Nystrom, Silverstein)Other
WalterShandsjshands@ucsc.eduHIVE: CMU (Bar-Joseph, Paten, Teichmann)Other
KavyaSharmankavya.sharman@Vanderbilt.EduTMC: Vanderbilt (Caprioli, Spraggins)Graduate Student
JayShendureshendure@uw.eduTMC: Caltech (Cai, Shendure, Trapnell)PI
BillShireyshirey@pitt.eduHIVE: IEC (Nystrom, Silverstein)Other
JonathanSilversteinj.c.s@pitt.eduHIVE: IEC (Nystrom, Silverstein)PI
JamesSlukajsluka@iu.eduHIVE: IU (Borner)Other
MichaelSnydermpsnyder@stanford.eduTMC: Stanford (Snyder)PI
AnupSoodanup.sood@ge.comRapid Technology ImplementationOther
JeffreySpragginsjeff.spraggins@vanderbilt.eduTMC: Vanderbilt (Caprioli, Spraggins)PI
PothurSrinivassrinivap@mail.nih.govNot ApplicableNIH Staff
CourtneyStockmanstockmca@stanford.eduTTD: Stanford (Harbury, Desai)Graduate Student
TianchengSuntc.sun@nih.govNot ApplicableNIH Staff
JasonSwedlowj.r.swedlow@dundee.ac.ukNot ApplicablePI
NorbertTavaresntavares@chanzuckerberg.comNot ApplicableGuests
MargaretVellamargaret_vella@hms.harvard.eduHIVE: Harvard (Gehlenborg)Other
Vishal GauthamVenkataraamanvgautham@stanford.eduTMC: Stanford (Snyder)Technician
WendyWangWangw@mail.nih.govRapid Technology ImplementationNIH Staff
CliveWasserfallclive@ufl.eduTMC: Florida (Atkinson, Bodenmiller, Nick)PI
GriffinWeberweber@hms.harvard.eduHIVE: IU (Borner)Other
BeiWeiwbei@stnford.eduTMC: Stanford (Snyder)Postdoc
JimWellsjim.wells@ucsf.eduNot ApplicablePI
Dong HyeYedonghye.ye@marquette.eduTTD: Purdue (Laskin)PI
PengYinpy@hms.harvard.eduTTD: Harvard (Yin)PI
KunZhangkzhang@bioeng.ucsd.eduTMC: UCSD (Zhang, Hagood, Jain, Kharchenko, Sun)PI
QianZhuzqian@jimmy.harvard.eduTTD: Caltech-Harvard (Cai, Yuan)Postdoc

Agenda

TimeSessionDescriptionSlides or Notes
Monday, September 23     Goal Day 1: Review what has been achieved so far
8:30 amWelcome & AgendaDonnalyn
8:40 amOpening RemarksRichard Conroy, Mike Snyder
9:00 amFunded project updates (1-6)Five minutes on:
Your project
Next year's deliverables
Collaborations
What should HuBMAP do?
and five minutes on cool science
HIVE-IEC
TMC-Stanford
RTI-Stanford
RTI-Broad
TMC-Caltech
TTD-Caltech
10:03 amBreak
10:33 amBreakout 1: Funding InitiativesHIVE - Tyler Best, Jonathan Silverstein
TMCs - Mike Snyder and Zorina Galis
TTDs - Peng Yin and Pothur Srinivas
RTIs - Richard Conroy and Ananda Roy
HIVE - Tyler Best, Jonathan Silverstein
TMCs - Mike Snyder and Zorina Galis
TTDs - Peng Yin and Pothur Srinivas
RTIs - Richard Conroy and Ananda Roy
11:43 amFunded project updates (7-9)Five minutes on:
your project
next year's deliverables
collaborations
what should HuBMAP do?
and five minutes on cool science
TMC-VU
RTI-GE
TTD-Harvard
12:15 pmLunch
1:05 pmFunded project updates (10-12)Five minutes on:
Your project
Next year's deliverables
Collaborations
What should HuBMAP do?
and five minutes on cool science
RTI-NW
TTD-Purdue
TMC-UF
1:47 pmCollaborative Projects Round RobinSuggested agenda:
Introductions
Progress during past year
Plans for the upcoming year: please note if goals, milestones or personnel have changed
Identify someone responsible for each proposed activity
Any new collaborations proposed?
Notes from all collaborative projects Round Robin sessions are found in Google Drive here: https://drive.google.com/open?id=1nLyuspH00_Hzg6FUbNxw9ONtaKnjhcDj
Round1
TMC-Caltech, TTD-Caltech & TMC-Stanford
TMC-VU & TMC-UCSD
TMC-UF, HIVE-CMU & HIVE-Harvard
TTD-Stanford & RTI-GE
TTD-Harvard, TTD-Purdue & RTI-NW
HIVE-IEC & RTI-Stanford
HIVE-NYGC, HIVE-Indiana & RTI-Broad
Round2
TMC-Caltech, TTD-Caltech & TMC-UF
TMC-VU, TTD-Purdue & RTI-Stanford
TMC-Stanford, HIVE-CMU & HIVE-Harvard
TMC-UCSD & RTI-NW
TTD-Harvard & TTD-Stanford
HIVE-IEC & RTI-Broad
HIVE-NYGC, HIVE-Indiana & RTI-GE
Round 3
TMC-Caltech, TTD-Caltech & TTD-Stanford
TMC-VU, TMC-UF & RTI-NW
TMC-UCSD, HIVE-CMU & HIVE-Harvard
TTD-Purdue & RTI-Stanford
TTD-Harvard & TMC-Stanford
HIVE-IEC & RTI-GE
HIVE-NYGC, HIVE-Indiana & RTI-Stanford
3:27 pmBreak
3:57 pmFunded Project updates (13-18)Five minutes on:
Your project
Next year's deliverables
Collaborations
What should HuBMAP do?
and five minutes on cool science
TMC-UCSD
TTD-Stanford
HIVE-CMU
HIVE-Harvard
HIVE-NYGC
HIVE-IU
5:00 pmAdjourn
5:05 pmPosters, demos, and networkingPosters should be 3' x 4'
TimeSessionDescriptionSlides or Notes
Tuesday September 24     Goal Day 2: Working group updates and outlining the roadmap for data releases
8:35 amWelcome & Agenda
8:45 amOpening - What are we hoping to achieveAjay & Jonathan
8:55 amWorking Group discussionPolicies - Gloria, Shin
Comms & Engagement - Danielle, Robin
TTDC - Clive, Long
Data Science - Nils, Cole
Policies - Gloria, Shin
Comms & Engagement - Danielle, Robin
TTDC - Clive, Long
Data Science - Nils, Cole
10:10 amSummarize and hear from working groupsSummaries from WG co-chairsPolicies
No slides provided by other WGs
10:55 amBreak & Group picture
11:55 amData Release and Portal Team OrientationSequencing - Maigan/Matt
Microscopy - Clive
Mass Spec - Jeff
Portal - Jonathan
Sequencing
Microscopy
Mass Spec
Portal
12:05 pmLunch
1:05 pmData Release Team Breakouts - Session 1Suggested structure for breakoutsSee Session 2 below for notes
2:35 pmBreak
3:05 pmReport backFour 12-minute presentations with feedback captureSequencing
Microscopy
Mass Spec
4:05 pmData Release Team Breakouts - Session 2Sequencing - Maigan/Matt
Microscopy - Clive
Mass Spec - Jeff
Sequencing
Microscopy
Mass Spec
5:05 pmWrap up day 2
5:10 pmPI, PM, EPC & NIH meetingA business meeting for NIH staff and PIsNIH, EPC, PIs, PMs
6:10 pm A business meeting for NIH and External Program ConsultantsNIH, EPCs
5:00 - 7:00 pmConcurrent session: Early career activityOpen to all
TimeSessionDescriptionSlides or Notes
Wednesday September 25      Goal Day 3: Explore collaborations with other programs in the broader research community
8:30 amEPC Remarks
Welcome & Agenda
8:45 amOpening - What are we hoping to achievePlans for Communications and Engagement Robin, Zorina, and Danielle
8:55 amWhat's going on with other consortia?An opportunity to hear from 3 consortia about their goals, scope and participantsHCA / CZI - Nobert Tavares, Fiona Griffin
SPARC - Tyler Best
HTAN - Mike Snyder, Shannon Hughes
9:55 amStewarding breakout topics for March meeting
10:25 amWhat's going on with other consortia?An opportunity to hear from 3 consortia about their goals, scope and participantsBICCN - Kun Zhang
KPMP - Sanjay Jain (remote)
EuroBioimaging - Jason Swedlow
10:55 amStewarding breakout topics for March meeting
11:15 amBreak
11:55amStewarding breakout topics for March meeting
12:05pmAdjourn & next stepsSet up next SC meeting, plans for the upcoming year...
12:05 pmMeeting Ends, Lunch
3:05 pmOptional visits to Stanford labs Visit to: Snyder, Harbury, Nolan, Angelo labsEveryone who signed up!
Collaboration Portal