Sci/Tech Webinars
The Sci/Tech Webinars cover a wide range of subjects from research, to technology, lessons learned from similar consortium that your team is involved with are also welcome. While we would welcome talks from anyone within the Consortium, these talks can also provide a great opportunity to highlight the science contributions of less-senior investigators and graduate students.
Each webinar consists of two presentations approximately 20 minutes in length with a 5 minute question and answer session at the end of the talk.Upcoming Webinars
FUTURE WEBINARS TO BE ANNOUNCED
Previous Webinars
Speakers: Vanderbilt TMC & PNNL TMC
Title: Integrative multi-modal molecular imaging of the pancreas
Speakers: UCSD/City of Hope TTD & UCSD Kidney TMC
Title: HiFi spatial transcriptome and RNA-chromatin interactions of human kidney
Speakers: Penn TMC & UCSD Female Reproductive TMC
Title: Collaboration with UCSD placenta and pregnant uterus group to coordinate female cell atlas collection
Speakers: Penn TMC & Northwestern RTI
HuBMAP RTI Team
Special Presentation: Jumpstart Awardee Hang Hu
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Title: Integrative multi-modal molecular imaging of the pancreas
Speakers: UCSD/City of Hope TTD & UCSD Kidney TMC
Title: HiFi spatial transcriptome and RNA-chromatin interactions of human kidney
Speakers: Penn TMC & UCSD Female Reproductive TMC
Title: Collaboration with UCSD placenta and pregnant uterus group to coordinate female cell atlas collection
Speakers: Penn TMC & Northwestern RTI
HuBMAP RTI Team
Special Presentation: Jumpstart Awardee Hang Hu
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Speakers: Jeff Spraggins, TMC Vanderbilt, Wei-Jun Qian, TMC PNNL
Title: OCT of Retina
Speakers: Louise Laurent, UCSD TMC, Tujin Shi, TTD PNNL/Northwestern
Title: Phosphoproteome imaging mass spectrometry for spleen tissue analysis
Speakers: Sean Bendall, RTI Stanford, Jeannie Camarillo, RTI Northwestern
Title: Joining forces to advance protein and proteoform imaging for HuBMAP
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Title: OCT of Retina
Speakers: Louise Laurent, UCSD TMC, Tujin Shi, TTD PNNL/Northwestern
Title: Phosphoproteome imaging mass spectrometry for spleen tissue analysis
Speakers: Sean Bendall, RTI Stanford, Jeannie Camarillo, RTI Northwestern
Title: Joining forces to advance protein and proteoform imaging for HuBMAP
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Speakers: Neil Kelleher, RTI Northwestern, Lili Pasa-Tolic, TTD PNNL
Title: Refining informatic approaches to enhance top-down proteomics data in the HuBMAP Consortium
Speakers: Brent Stockwell, Penn State/Columbia TTD, Sean Bendall RTI Stanford
Title: Validating Commercial Antibodies for Use in the HuBMAP
Speakers: Wei-Jun Qian, TMC PNNL, Tujin Shi, TTD PNNL/Northwestern
Title: Integration of proteome and phosphoproteome mapping of human pancreatic tissue sections
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Title: Refining informatic approaches to enhance top-down proteomics data in the HuBMAP Consortium
Speakers: Brent Stockwell, Penn State/Columbia TTD, Sean Bendall RTI Stanford
Title: Validating Commercial Antibodies for Use in the HuBMAP
Speakers: Wei-Jun Qian, TMC PNNL, Tujin Shi, TTD PNNL/Northwestern
Title: Integration of proteome and phosphoproteome mapping of human pancreatic tissue sections
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HuBMAP Demo Day
Speakers:
Philip Blood and Jonathan Silverstein HuBMAP HIVE Infrastructure and Engagement Component at Pittsburgh Supercomputing Center/Carnegie Mellon University
Katy Borner from HuBMAP HIVE Mapping Component at Indiana University
Nils Gehlenborg HuBMAP HIVE Tools Component at Harvard Medical School
Matt Ruffalo from HuBMAP HIVE Tools Component at Carnegie Mellon University
Rajul Satija from HuBMAP HIVE Mapping Component at the New York Genome Center
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Speakers:
Philip Blood and Jonathan Silverstein HuBMAP HIVE Infrastructure and Engagement Component at Pittsburgh Supercomputing Center/Carnegie Mellon University
Katy Borner from HuBMAP HIVE Mapping Component at Indiana University
Nils Gehlenborg HuBMAP HIVE Tools Component at Harvard Medical School
Matt Ruffalo from HuBMAP HIVE Tools Component at Carnegie Mellon University
Rajul Satija from HuBMAP HIVE Mapping Component at the New York Genome Center
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Speakers: Mark Atkinson, TMC Florida, Wei-Jun Qian, TMC PNNL
Title: Integrative multi-modal molecular imaging of the pancreas and regional lymphatic system
Speakers: Louise Laurent, TMC UCSD, Katy Borner HIVE MC IU
Title: Building 3D tissue Maps for the Placenta and Pregnant Uterus
Speakers: Neil Kelleher, RTI Northwestern, Jeannie Camarillo, RTI Northwestern, Junhyong Kim, TMC Penn
Title: HuBMAP RTI Northwestern
Speakers: Mike Snyder, TMC Stanford, Evan Macosko, RTI Broad Institute
Title: Integrating Slide-seq and snRNA-seq data for human colon tissue
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Title: Integrative multi-modal molecular imaging of the pancreas and regional lymphatic system
Speakers: Louise Laurent, TMC UCSD, Katy Borner HIVE MC IU
Title: Building 3D tissue Maps for the Placenta and Pregnant Uterus
Speakers: Neil Kelleher, RTI Northwestern, Jeannie Camarillo, RTI Northwestern, Junhyong Kim, TMC Penn
Title: HuBMAP RTI Northwestern
Speakers: Mike Snyder, TMC Stanford, Evan Macosko, RTI Broad Institute
Title: Integrating Slide-seq and snRNA-seq data for human colon tissue
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Speakers: Andreas Bueckle and Bruce Herr, Indiana University HIVE Mapping Component
Title: Register your tissue so it can be explored in context: New releases of the CCF Registration and Exploration User Interfaces
Speakers: Mark Keller, Harvard Medical School HIVE Tools Component
Title: Explore spatial single-cell data with Vitessce visualizations
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Title: Register your tissue so it can be explored in context: New releases of the CCF Registration and Exploration User Interfaces
Speakers: Mark Keller, Harvard Medical School HIVE Tools Component
Title: Explore spatial single-cell data with Vitessce visualizations
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Speaker: Stephanie Bobadilla-Regalado, Gregory Lab
Title: An Investigation of the Up-Regulated Genes Found in the Female Reproductive Tract: An analysis of immunoglobulin genes using single cell RNA sequencing Speakers: Tatiana Gonzalez, Gregory Lab
Title: Effects of Hormonal Therapy on the Single Cellular Level
Speakers: Ogechukwu Etuazim, O’Neill Lab
Title: Spatial Transcriptomics: Regional Importance in the Female Reproductive System Speakers: Kate da Silva, PICSL
Title: 3D Printed Ovarian Molds Speakers: Casey Henson, PICSL
Title: 3D Modeling of the Uterus with Magnetic Resonance Imaging Speakers: Injyil Gates, Nolan Lab
Title: Small Bowel and Colon Codex Segmentation Speakers: Oluwafolajinmi Olugbodi, The Kim Lab
Title: Kim's Collection - A Metadata Collection App Speakers: Roselkis Morla Adames, Gehlenborg Lab
Title: Visualization of Diversity in HuBMAP Data View Video
Title: An Investigation of the Up-Regulated Genes Found in the Female Reproductive Tract: An analysis of immunoglobulin genes using single cell RNA sequencing Speakers: Tatiana Gonzalez, Gregory Lab
Title: Effects of Hormonal Therapy on the Single Cellular Level
Speakers: Ogechukwu Etuazim, O’Neill Lab
Title: Spatial Transcriptomics: Regional Importance in the Female Reproductive System Speakers: Kate da Silva, PICSL
Title: 3D Printed Ovarian Molds Speakers: Casey Henson, PICSL
Title: 3D Modeling of the Uterus with Magnetic Resonance Imaging Speakers: Injyil Gates, Nolan Lab
Title: Small Bowel and Colon Codex Segmentation Speakers: Oluwafolajinmi Olugbodi, The Kim Lab
Title: Kim's Collection - A Metadata Collection App Speakers: Roselkis Morla Adames, Gehlenborg Lab
Title: Visualization of Diversity in HuBMAP Data View Video
Speakers: Fiona Ginty, General Electric RTI, and Katy Borner, Indiana University HIVE Mapping Component
Title: 3D Tissue Reconstruction and Segmentation in Support of CCF Design Speakers: Sanjay Jain, Washington University TMC, Evan Macosko, Broad Institute RTI, and Kian Kalhor, UCSD TMC
Title: Integrating Slide-seq and snRNA-seq data for human kidney tissue View Video
Title: 3D Tissue Reconstruction and Segmentation in Support of CCF Design Speakers: Sanjay Jain, Washington University TMC, Evan Macosko, Broad Institute RTI, and Kian Kalhor, UCSD TMC
Title: Integrating Slide-seq and snRNA-seq data for human kidney tissue View Video
Speakers: Monica Dayao, HIVE Tools Component, Carnegie Mellon University
Title: Membrane marker selection for segmenting spatial proteomics data Speakers: Andrea Radtke, National Institutes of Health
Title: Open-source imaging workflows and IBEX technology Speakers: Nils Gehlenborg, HIVE Tools Component, Harvard Medical School
Title: Segmentation imaging visualizations View Video
Title: Membrane marker selection for segmenting spatial proteomics data Speakers: Andrea Radtke, National Institutes of Health
Title: Open-source imaging workflows and IBEX technology Speakers: Nils Gehlenborg, HIVE Tools Component, Harvard Medical School
Title: Segmentation imaging visualizations View Video
Speakers: Long Cai, TMC Cal Tech
Title: Integrating intron seqFISH with seqFISH
Speakers: Benjamin Des Soye, RTI Northwestern
Title: Characterization of Conjugated Affinity Reagents at Molecular Resolution to Promote Reproducibility in Multiplex Imaging
Speakers: Noah Greenwald, RTI Stanford
Title: Developing a harmonized dataset for cross-platform segmentation
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Title: Integrating intron seqFISH with seqFISH
Speakers: Benjamin Des Soye, RTI Northwestern
Title: Characterization of Conjugated Affinity Reagents at Molecular Resolution to Promote Reproducibility in Multiplex Imaging
Speakers: Noah Greenwald, RTI Stanford
Title: Developing a harmonized dataset for cross-platform segmentation
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Speakers: Pehr Harbury, TTD Stanford, and Peng Yin, TTD Harvard
Title: Electro-SABER: Volumetric Protein Mapping Collaboration
Speakers: Long Cai, TMC Cal Tech, Mike Snyder, TMC Stanford, Jay Shendure, University of Washington, Cole Trapnell, University of Washington, Shin Lin, University of Washington
Title: Cal Tech/Stanford Study of Cardiac Tissues
Speakers: Kun Zhang, TMC UCSD, Sanjay Jain, TMC UCSD, Peng Yin, TTD Harvard
Title: Optimizing tissue processing methods for comparative analysis of DART-FISH2 and SABER-FISH on adult human kidney tissue
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Title: Electro-SABER: Volumetric Protein Mapping Collaboration
Speakers: Long Cai, TMC Cal Tech, Mike Snyder, TMC Stanford, Jay Shendure, University of Washington, Cole Trapnell, University of Washington, Shin Lin, University of Washington
Title: Cal Tech/Stanford Study of Cardiac Tissues
Speakers: Kun Zhang, TMC UCSD, Sanjay Jain, TMC UCSD, Peng Yin, TTD Harvard
Title: Optimizing tissue processing methods for comparative analysis of DART-FISH2 and SABER-FISH on adult human kidney tissue
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Speakers: Andreas Bueckle & Katy Borner, MC-IU
Title: Registration User Interface (RUI) and Visible Human Massive Open Online Course (VHMOOC)
Speakers: Rahul Satija, HIVE NY Genome Center
Title: Presenting Azimuth
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Title: Registration User Interface (RUI) and Visible Human Massive Open Online Course (VHMOOC)
Speakers: Rahul Satija, HIVE NY Genome Center
Title: Presenting Azimuth
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Speakers: Julia Laskin, TTD Purdue and Elizabeth Neumann, TMC Vanderbilt
Title: Multimodal DESI and MALDI IMS for Lipid Investigation of the Human Kidney
Speakers: Bennett Landman, Vanderbilt TMC
Title: Design and Construction of 3-D Atlases to Support Multi-Scale Anatomical Mapping
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Title: Multimodal DESI and MALDI IMS for Lipid Investigation of the Human Kidney
Speakers: Bennett Landman, Vanderbilt TMC
Title: Design and Construction of 3-D Atlases to Support Multi-Scale Anatomical Mapping
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Speakers: Jeff Spraggins & Katerina Djambazova, TMC Vanderbilt
Title: MALDI imaging mass spectrometry of spleen tissue for the construction of 3D molecular atlases
Speakers: Long Cai, TMC Cal Tech, and Greg Booth, TMC University of Washington
Title: sciATAC3 and seqFISH data from the Human Spleen
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Title: MALDI imaging mass spectrometry of spleen tissue for the construction of 3D molecular atlases
Speakers: Long Cai, TMC Cal Tech, and Greg Booth, TMC University of Washington
Title: sciATAC3 and seqFISH data from the Human Spleen
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Speaker: Clive Wasserfall, TMC Florida
Title: Collaborative Project Overview
Speaker: Neil Kelleher, RTI Northwestern
Title: Antibody Registry
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Title: Collaborative Project Overview
Speaker: Neil Kelleher, RTI Northwestern
Title: Antibody Registry
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Speaker: Elizabeth Neumann, Vanderbilt - TMC
Title: CODEX MxIF and IMS for Investigation of Heathy and Infected Kidneys
Speaker: Katy Borner, Indiana HIVE-MC
Title: Anatomical Structures, Cell Types, and Biomarkers (ASCT+B) Tables: Table Construction and Usage
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Title: CODEX MxIF and IMS for Investigation of Heathy and Infected Kidneys
Speaker: Katy Borner, Indiana HIVE-MC
Title: Anatomical Structures, Cell Types, and Biomarkers (ASCT+B) Tables: Table Construction and Usage
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Speaker: Noah Greenwald - Stanford RTI
Title: Accurate cross-platform, cross-tissue segmentation in multiplexed imaging data
Speaker: Robert Stickles, Broad RTI
Title: Slide-seq: sensitive spatial genome wide expression profiling at cellular resolution
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Title: Accurate cross-platform, cross-tissue segmentation in multiplexed imaging data
Speaker: Robert Stickles, Broad RTI
Title: Slide-seq: sensitive spatial genome wide expression profiling at cellular resolution
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Speaker: Paul Thomas - Northwestern RTI
Title: Development of a FAIR Infrastructure for Communicating and Cataloging Experimentally Verified Proteoforms
Speaker: Clive Wasserfall, Florida TMC
Title: Age, Growth, Organ Size and Cell Size in Health and Disease
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Title: Development of a FAIR Infrastructure for Communicating and Cataloging Experimentally Verified Proteoforms
Speaker: Clive Wasserfall, Florida TMC
Title: Age, Growth, Organ Size and Cell Size in Health and Disease
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Speaker: Nick Nystrom, PSC/CMU - HIVE IEC
Title: Bridges-2: High Performance Data Analytics, AI and Computing Available to HuBMAP
Speaker: Finoa Ginty, GE Research RTI
Title: Cell DIVE - A Decade of Research Validation and Translation
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Title: Bridges-2: High Performance Data Analytics, AI and Computing Available to HuBMAP
Speaker: Finoa Ginty, GE Research RTI
Title: Cell DIVE - A Decade of Research Validation and Translation
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Speaker: Cole Trapnell, University of Washington - CalTech TMC
Title: Embryo-scale, Single-cell Spatial Transcriptomics
Speaker: Gary Nolan, Stanford TMC
Title: Single-cell Mapping of the Human Small Bowel and Colon
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Title: Embryo-scale, Single-cell Spatial Transcriptomics
Speaker: Gary Nolan, Stanford TMC
Title: Single-cell Mapping of the Human Small Bowel and Colon
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Speaker: Nils Gehlenborg, Harvard Medical School - HIVE TC
Title: Visualization of Multiplexed Single-Cell Tissue Data with Vitessce
Speaker: Hiroshi Sasaki, Harvard TTD
Title: Painting Chromosomes with DNA-PAINT and SABER
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Title: Visualization of Multiplexed Single-Cell Tissue Data with Vitessce
Speaker: Hiroshi Sasaki, Harvard TTD
Title: Painting Chromosomes with DNA-PAINT and SABER
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Speaker: Ye Yeun, CMU - HIVE TC
Title: Deep Learning for Inferring Interactions from Single-Cell Expression and Spatial Data
Speaker: Rahul Satija, New York Genome Center - HIVE MC
Title: Integrating Single-Cell Data Across Technologies and Modalities
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Title: Deep Learning for Inferring Interactions from Single-Cell Expression and Spatial Data
Speaker: Rahul Satija, New York Genome Center - HIVE MC
Title: Integrating Single-Cell Data Across Technologies and Modalities
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Speaker: Maigan Brusko, University of Florida - TMC
Title: nPOD Network for Pancreatic Organ Donors: Mapping Histology and Function in Autoimmunity
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Title: nPOD Network for Pancreatic Organ Donors: Mapping Histology and Function in Autoimmunity
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Speaker: DongHye He, Purdue University-TTD
Title: Machine Learning Based Sparse Sampling Approach Toward High Throughput Microscopic Imaging
Speaker: Song Chen, University of California, San Diego-TMC
Title: Linking Transcriptome and Chromatin Accessibility in Nanoliter Droplets for Single-cell Sequencing
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Title: Machine Learning Based Sparse Sampling Approach Toward High Throughput Microscopic Imaging
Speaker: Song Chen, University of California, San Diego-TMC
Title: Linking Transcriptome and Chromatin Accessibility in Nanoliter Droplets for Single-cell Sequencing
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Speaker: Noah Greenwald, Stanford RTI
Title: Multiplexed Ion Beam Imaging: Using MIBI to characterize clinical samples with highly multiplexed spatial proteomics.
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Speaker: Neil Kelleher, Northwestern-RTI
Title: Precise Mapping of Protein Composition using Top-Down Proteomics
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Title: Multiplexed Ion Beam Imaging: Using MIBI to characterize clinical samples with highly multiplexed spatial proteomics.
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Speaker: Neil Kelleher, Northwestern-RTI
Title: Precise Mapping of Protein Composition using Top-Down Proteomics
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Speakers: Katy Borner, Andreas Bueckle, Leonard Cross, Indiana University, HIVE-MC
Title: HuBMAP CCF Registration User Interace Prototype
Speaker: Jeffery Spraggins Vanderbilt University, TMC
Title: MALDI Imaging Mass Spectrometry: Next-Generation Molecular Histology
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Title: HuBMAP CCF Registration User Interace Prototype
Speaker: Jeffery Spraggins Vanderbilt University, TMC
Title: MALDI Imaging Mass Spectrometry: Next-Generation Molecular Histology
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