CalTech TMCStanford University TMCUniversity of California San Diego TMCUniversity of Florida TMCVanderbilt University TMC
PIs Long Cai, CalTech;
Jay Shendure & Cole Trapnell, University of Washington
Mike Snyder & Garry Nolan, Stanford;
Yiing Lin, Washington University of St. Louis
Kun Zhang & Xin Sun, UCSD;
Sanjay Jain, Washington U.;
Jim Hagood, U. of North Carolina at Chapel Hill
Mark Atkinson, Harry Nick, & Kevin Otto, U. of Florida;
Bernd Bodenmiller, University of Zurich
Richard Caprioli & Jeff Spraggins, Vanderbilt
Heart
sciATAC-seq
sciATAC-seq [SnapATAC][
seqFISh
seqFISH [Lab Processed]
Kidney (left)
scATAC-seq (SNARE-seq) [Lab Processed]Autofluorescence Microscopy
SNARE-seqMALDI IMS negative
snRNA-seqMALDI IMS positive
snRNA-seq [Salmon] PAS Stained Microscopy
snRNA-seq (SNARE-seq) [Lab Processed]Untargeted LC-MS
Kidney (right)
scATAC-seq (SNARE-seq) [Lab Processed]Autofluorescence Microscopy
SNARE-seqMALDI IMS negative
snRNA-seqMALDI IMS postiive
snRNA-seq [Salmon]PAS Stained Microscopy
snRNA-seq (SNARE-seq) [Lab Processed]Untargeted LC-MS
Large intestine
Bulk ATAC-seq
Bulk ATAC-seq [BWA + MACS2]
Bulk RNA-seq
Bulk RNA-seq [Salmon]
CODEX
CODEX [Cytokit + SPRM]
snATAC-seq
snATAC-seq [Snap-ATAC]
snRNA-seq
snRNA-seq [Salmon]
Targeted Shotgun / Flow-injection LC-MS
TMT LC-MS
Untargeted LC-MS
Whole Genome Sequencing
Liver
sciATAC-seq
sciATAC-seq [SnapATAC]
Lung (right)
sciATAC-seqsnRNA-seq
sciATAC-seq [SnapATAC]snRNA-seq [Salmon]
Lymph node
CODEX
CODEX [Cytokit + SPRM]
Imaging Mass Cytometry
Lightsheet Microscopy
scRNA-seq (10x Genomics)
scRNA-seq (10x Genomics) [Salmon]
Pancreas
sciATAC-seq
sciATAC-seq [SnapATAC]
Small intestine
seqFIShBulk ATAC-seq
seqFISH [Lab Processed]Bulk ATAC-seq [BWA + MACS2]
Bulk RNA-seq
Bulk RNA-seq [Salmon]
CODEX
CODEX [Cytokit + SPRM]
Targeted Shotgun / Flow-injection LC-MS
TMT LC-MS
Untargeted LC-MS
Whole Genome Sequencing
Spleen
sciATAC-seqCODEX
sciATAC-seq [SnapATAC] CODEX [Cytokit + SPRM]
seqFISHImaging Mass Cytometry
seqFISH [Lab Processed]Lightsheet Microscopy
scRNA-seq (10x Genomics)
scRNA-seq (10x Genomics) [Salmon]
Thymus
CODEX
CODEX [Cytokit + SPRM]
Imaging Mass Cytometry
Lightsheet Microscopy
scRNA-seq (10x Genomics)
scRNA-seq (10x Genomics) [Salmon]
Collaboration Portal