The following provides a brief breakdown of the first HuBMAP data release contents. Initial release contents include, (but are not limited to) the following:
HuBMAP Data Portal
Access to search and view:
Sequencing, Microscopy & Mass Spectrometry imaging data.
Spatial CCF data for select kidney and spleen datasets.
Faceted search for select metadata fields.
Cell naming future functionality showcase.
Three (3) levels of access
Public Access
Anonymous Access
Authenticated Access
Seven (7) Organ Types
Heart, Kidney, Large Intestine, Small Intestine, Lymph Node, Spleen, Thymus
Over 200 Datasets
We will send an overview of our phased release process and instructions to reviewers regarding the Alpha phase the week of July 6.
Save the Date
HIVE Demo Day/Hackathon
HIVE Demo Day: September 21-22, 2020
Hackathon focused on identification of cell types: September 23, 2020
28th Conference on Intelligent Systems for Molecular Biology
HuBMAP members will be hosting a special session, "HuBMAP: Integrating genomics, imaging and mass-spectrometry to construct single-cell human tissue maps", at the International Society for Computational Biologyon Tuesday, July 14 between 2 and 6 PM EDT.
Featured speakers include Michael Snyder, Cole Trapnell, Nick Nystrom, Ziv Bar-Joseph, Nils Gehlenborg, Katy Borner, and Ajay Pillai.
A link to the schedule and topics can be found at this link.
Registration can be found here.
Publications Reminder
We are tracking the various stages of consortium publications, from idea to published at this link. Don't forget to check in and update the tracker with any status updates or new publications that you and your team have in the works.
Have a Happy and Safe 4th of July Weekend!
Reminders, Links to Resources, etc.
Upcoming NIH Deadlines
Yearly Progress Reports (RPPRs) are due 6-8 weeks in advance of the end of the funding period. For your reference, here are the end dates for the different Components:
* RTIs - August 31, 2020
HuBMAP Haha
The optimist sees the glass half full. The pessimist sees the glass half empty. The chemist sees the glass completely full, half with liquid and half with air.
Developers in need of HIVE infrastructure may request access through the PSC web form, foundhere.
Instructions for using HIVE infrastructure can now be found in the "Quick Links" section of the Collaboration Portal. A direct link to this documentation can be found here. Please report any issues or direct any questions to help@hubmapconsortium.org.
Content Suggestions
The IEC is seeking to collect information of general interest from individual members and groups and to share with the rest of the Consortium. Please submit content suggestions by emailing admin@hubmapconsortium.org.
Past Newsletters are available on the Collaboration Portal.
For comments, suggestions about how to improve the HuBMAP happenings, or questions about the consortium, please contact: help@hubmapconsortium.org
