In honor of Mardi Gras, we present this CODEX image of a kidney from Elizabeth Neumann at Vanderbilt TMC, in the hopes that you will take pity on yours this year!
Are you looking for fame and notoriety? Send your best images to dena.procaccini@nih.gov.
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External Sci-Tech Webinar: March 8 @ 3PM EST
Registration is now open for the next external webinar. HuBMAP members must register for this event to attend.
The first presentation will be delivered by Katy Börner and Andreas Bueckle of HIVE Indiana University Mapping Component and will feature the Registration User Interface (RUI) and Visible Human Massive Open Online Course (VHMOOC).
Rahul Satija of HIVE New York Genome Center Mapping Component will then present Azimuth: An App for Reference-Based Single-Cell Analysis.
Enrique will give a presentation with an ontology expert on HCA’s approach to implementing ontologies.
Pilot prep for three HCA 10x datasets ingest to HuBMAP:
Continuing discussion of logistics.
HCA 10x dataset ingest to HuBMAP
HuBMAP Cell Atlas Visual Analysis Workshop
The HuBMAP Tools Component at Harvard Medical School will be hosting a virtual workshop for members of cell atlas projects and the broader community. The goal of the workshop is to discuss and prioritize interactive visualization and analysis functionality that should be integrated into the HuBMAP Portal and other related data resources. The information gathered in this workshop will be incorporated into a roadmap for the HuBMAP Portal.
The event will include a presentation of the tools that are currently available in the HuBMAP Portal and future directions.
Oftentimes the software behind the HuBMAP Data Portal is overshadowed by the graphical interfaces that allow exploration of the tissue data. Here, we'll shine a light on work completed by various groups who are deep in the software development process.
We've talked a lot about the data available through the HuBMAP Data Portal, but if you've ever wondered how all that data is received and validated, this week's feature is for you!
The ingest-validation-tools, a collaboration between HIVE TC-Harvard Medical school (Chris Briggs, Chuck McCallum, Nils Gehlenborg) and HIVE IEC (Joel Welling) breaks down what transpires for all data submitted by HuBMAP sites.
Check out their well-organized Github repository and meditate on the efforts made to make these datasets live in the HuBMAP Data Portal.
Presented by Oxford Global, the 3 day online Spatial Biology Congress brings together world leaders from pharmaceutical and biotechnology companies as well as academic institutions to discuss the latest insights into Spatial Biology on Drug Development and Therapeutic Development.
Katy Börner, PI of HIVE-TC Indiana University, will be presenting and participating in a panel discussion at the event.
Developers in need of HIVE infrastructure may request access through the PSC web form, found here.
Instructions for using HIVE infrastructure can now be found in the "Quick Links" section of the Collaboration Portal. A direct link to this documentation can be foundhere. Please report any issues or direct any questions tohelp@hubmapconsortium.org.
